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Table 2 Genetic alterations in patients with DUX4-IGH and ZNF384 rearrangements

From: Transcriptome sequencing in pediatric acute lymphoblastic leukemia identifies fusion genes associated with distinct DNA methylation profiles

Fusion gene

Sample

Mutated ALL driver genesa

Copy number alterations

DUX4-IGH fusion gene

DUX4-IGH

ALL_176

na

ERG deletion

DUX4-IGH

ALL_218

na

Inconclusive

DUX4-IGH

ALL_312

NRAS (p.G12D)

ERG deletion

DUX4-IGH

ALL_371

NRAS (p.G12D)

ERG deletion

DUX4-IGH

ALL_390

na

ERG deletion

DUX4-IGH

ALL_392

na

ERG deletion

DUX4-IGH

ALL_501

NRAS (p.G12S), KMT2D (p.H3883fs)

ERG deletion

DUX4-IGH

ALL_546

NRAS (p.G12S)

ERG deletion

DUX4-chr8q24.21-IGH

ALL_205

NRAS (p.G12D)

Inconclusive

ZNF384-rearranged fusion genes

TCF3-ZNF384

ALL_604

PTPN11 (p.E76Q)

chr7q deletion

TCF3-ZNF384

ALL_622

PTPN11 (p.T73I)

chr7q deletion

TAF15-ZNF384, ZNF384-TAF15

ALL_8

NRAS (p.Q61H)

EP300-ZNF384, ZNF384-EP300

ALL_52

na

EP300-ZNF384, ZNF384-EP300

ALL_613

na

EP300-ZNF384

ALL_693

na

ATP5C1-ZNF384

ALL_257

CREBBP (p.R1408C)

  1. aKnown ALL driver genes are reported in this table
  2. na no targeted sequencing data available