Functional involvement of lncRNAs | Techniques or methods used | References |
---|---|---|
LncRNA-protein interaction | • RNA immunoprecipitation (RIP) • High-throughput sequencing of RNA isolated by cross-linking immunoprecipitation (HITS-CLIP) • Photoactivatable ribonucleotide-enhanced cross-linking and immunoprecipitation (PAR-CLIP) | |
LncRNA-DNA interaction | • Chromatin isolation by RNA purification (ChIRP) • RNA antisense purification (RAP) • Capture hybridization analysis of RNA targets (CHART) | |
LncRNA-RNA interaction | • RNA antisense purification followed by RNA sequencing (RAP-RNA) • Cross-linking, ligation and sequencing of hybrids (CLASH) | |
LncRNA localization | • RNA single-molecule fluorescence in situ hybridization (RNA smFISH) |