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Table 1 tRF databases

From: tRNA-derived RNA fragments in cancer: current status and future perspectives

Database Description URL link
tRFdb [7] Present the tRF sequences and read counts from eight species, including humans. http://genome.bioch.virginia.edu/trfdb/
MINTbase [36] A repository tabulating tRF information that arises from the nucleic and mitochondrial tRNAs. http://cm.jefferson.edu/MINTbase/
tRFexplorer [37] Show the expression profile of tRFs in every cell line in NCI-60 as well as for each TCGA tumor type. https://trfexplorer.cloud/
tRF2Cancer [10] Identify tRFs from small RNA sequencing datasets from various cancer types. http://rna.sysu.edu.cn/tRFfinder/
OncotRF [38] Provide the most comprehensive tRF resource relating to human cancers including exploration of tRF function and identification of diagnostic and prognostic biomarkers. http://bioinformatics.zju.edu.cn/OncotRF