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Table 1 tRF databases

From: tRNA-derived RNA fragments in cancer: current status and future perspectives

Database

Description

URL link

tRFdb [7]

Present the tRF sequences and read counts from eight species, including humans.

http://genome.bioch.virginia.edu/trfdb/

MINTbase [36]

A repository tabulating tRF information that arises from the nucleic and mitochondrial tRNAs.

http://cm.jefferson.edu/MINTbase/

tRFexplorer [37]

Show the expression profile of tRFs in every cell line in NCI-60 as well as for each TCGA tumor type.

https://trfexplorer.cloud/

tRF2Cancer [10]

Identify tRFs from small RNA sequencing datasets from various cancer types.

http://rna.sysu.edu.cn/tRFfinder/

OncotRF [38]

Provide the most comprehensive tRF resource relating to human cancers including exploration of tRF function and identification of diagnostic and prognostic biomarkers.

http://bioinformatics.zju.edu.cn/OncotRF