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Table 2 Potential predictive and prognostic biomarker evaluation and technologies

From: Checkpoint inhibitors in hematological malignancies

Technology

Target cells/tissue

Purpose

Reference

Immunohistochemistry

FFPE tissue

Analysis of protein expression in tumor cells

Immune cell profiling in TME

[11, 157]

Flow cytometry

Blood, fresh/frozen tumor tissue

Analysis of different subsets of immune cells

[141]

ELISA

Blood

Analysis of cytokine

Chemokine and antibodies against tumor-specific antigen

[162]

Enzyme-linked immunospot

Blood

Quantification of T or B cells, Analysis of cytokine and chemokine

[158]

Protein microarray

Blood

Analysis of antibody signature

[159]

Gene expression profiling

Blood, fresh/frozen/FFPE tumor tissue

Analysis of gene signatures in tumor/immune cells

[145]

TCR deep sequencing

Blood

T cell receptor profiling

[160]

NGS (WES, RNA-seq)

Fresh/FFPE tissue

Mutational load

Prediction of immunogenecity of tumor neoantigens

[92, 143]

Epigenomics

Blood, fresh/frozen/FFPE tumor tissue

Analysis of immune cell specific epigenetic changes

[161]

  1. FFPE formalin-fixed, paraffin-embedded, TME tumor microenvironment, ELISA enzyme-linked immunosorbent assay, NGS next-generation sequencing, WES whole exome sequencing