Gene modification strategies for next-generation CAR T cells against solid cancers
Journal of Hematology & Oncology volume 13, Article number: 54 (2020)
Immunotherapies have become the backbone of cancer treatment. Among them, chimeric antigen receptor (CAR) T cells have demonstrated great success in the treatment of hematological malignancies. However, CAR T therapy against solid tumors is less effective. Antigen targeting; an immunosuppressive tumor microenvironment (TME); and the infiltration, proliferation, and persistence of CAR T cells are the predominant barriers preventing the extension of CAR T therapy to solid tumors. To circumvent these obstacles, the next-generation CAR T cells will require more potent antitumor properties, which can be achieved by gene-editing technology. In this review, we summarize innovative strategies to enhance CAR T cell function by improving target identification, persistence, trafficking, and overcoming the suppressive TME. The construction of multi-target CAR T cells improves antigen recognition and reduces immune escape. Enhancing CAR T cell proliferation and persistence can be achieved by optimizing costimulatory signals and overexpressing cytokines. CAR T cells equipped with chemokines or chemokine receptors help overcome their poor homing to tumor sites. Strategies like knocking out immune checkpoint molecules, incorporating dominant negative receptors, and chimeric switch receptors can favor the depletion or reversal of negative T cell regulators in the TME.
CAR T cells are autologous or allogeneic T cells genetically engineered to express a synthetic chimeric antigen receptor (CAR). These cells are emerging as a promising cancer immunotherapy. A typical CAR has an extracellular single-chain variable fragment (scFv), fused through a transmembrane domain to intracellular costimulatory signaling domains. The recognition of tumor antigens by scFv activates the intracellular costimulatory signaling domain, subsequently stimulating T cell proliferation and eliminating tumor cells through cytolysis and cytokine release. Based on the structure of the intracellular region, CARs are divided into three generations. First-generation CARs contain only one intracellular signaling domain, CD3ζ, to provide signal 1, but this is insufficient to trigger CAR T cell expansion and engender continuous antitumor activity in vivo . In contrast, second- and third-generation CARs utilize first-generation CARs as a backbone and incorporate one or two additional costimulatory signaling domains, such as CD28 or 4-1BB (CD137), respectively . Unlike T cell receptors (TCRs), CARs recognize specific surface targets on tumor cells in a major histocompatibility complex (MHC)-unrestricted manner, effectively preventing immune escape by downregulating MHC expression in tumor cells  (Fig. 1a). In addition to peptide antigens, CARs also recognize carbohydrates and glycolipid antigens, thus expanding the range of tumor antigen targets .
To date, CAR T cell-based immunotherapy has yielded remarkable clinical success in patients with CD19-positive leukemia or lymphoma [5, 6]. Owning to these results, Kymriah, a CAR T therapy developed by Novartis, has been approved by the US Food and Drug Administration (FDA) and the European Commission for the treatment of relapsed or refractory acute lymphoblastic leukemia in children and young adults. In October 2017, the US FDA permitted Yescarta, another CD19-targeting CAR T cell product, to treat relapsed or difficult-to-treat large B cell lymphoma [7, 8].
However, there remain a series of challenges that need to be urgently tackled in CAR T cell therapy. In the manufacturing process of CAR T cells, most of the currently available CAR T cells are from autologous T cells. Generation of autologous CAR T cells require huge costs and a long production cycle, limiting their large-scale clinical application. Therefore, universal CAR T cells derived from allogeneic healthy donors are created as an “off-the-shelf” product. Graft-versus-host disease can be avoided by abating TCR and human leukocyte antigen class-1 (HLA-I) expression in universal CAR T cells with gene-editing technologies  (Fig. 1b). Apart from this, desirable efficacy of CAR T cells has not been achieved in solid tumors, due to multiple limiting factors. Five major challenges of using CAR T cells to treat solid tumors have been summarized . These include the heterogeneity of tumor antigens, toxicity control, inadequate infiltration, poor proliferation and persistence, and the immunosuppressive tumor microenvironment (TME). Due to the heterogeneity of solid tumors, CAR T cells targeting a single antigen may result in tumor recurrence due to excessive growth of antigen-negative cells or cells expressing low antigen levels. The migration of CAR T cells to the tumor site is the primary step in achieving effector function. Nevertheless, insufficient expression of chemokine receptors in CAR T cells and physical barriers inhibit their homing to tumor sites. Costimulatory signals and cytokine production are also associated with CAR T cell function . The absence of costimulatory molecules can lead to CAR T cell inactivation, while the incorporation of costimulatory molecules strengthens CAR T cell function . The presence of cytokines, as signal 3, is a prerequisite for the full activation of CAR T cells, but exhausted CAR T cells have lower levels of cytokine receptor expression and reduced reactivity to inflammatory cytokines , causing the abatement of cytotoxic function. In addition, the TME weakens the function of T cells through a variety of factors, such as the upregulated and sustained expression of inhibitory receptors , which is the main characteristic of exhausted T cells . These problems highlight the significance of developing new methods to optimize CAR T cell structure and overcome the treatment hurdles raised by solid tumors.
Herein, we outline and analyze several novel strategies for enhancing CAR T cell function, to improve therapeutic responses against solid tumors, including targeting multiple antigens, overexpressing cytokine or chemokine receptors, enhancing costimulatory signals, and eliminating negative T cell regulators. These next-generation CAR T cells have shown promise in preclinical models and they have great prospects for the treatment of solid tumors.
Improving CAR T cell antigen recognition
Antigen-specific recognition is a prerequisite for effective CAR T cell therapy. To avoid immune escape and improve safety, tumor-associated antigens (TAAs) that are specifically and highly expressed in tumor tissue are usually selected as targets for CAR T cells [16, 17]. However, these TAAs are also expressed in normal tissues and therefore, despite their low levels, off-target cross-reactions still occur with CAR T cell therapy. In addition, in contrast to hematological tumors, solid tumors are characterized by antigen heterogeneity. CAR T cells preferentially kill tumor cells with high expression levels of the targeted antigens, but they may not eliminate cells with lower antigen density . Various studies have shown that CAR T cell treatment results in the down-regulation of targeted antigens, which is one of the reasons for tumor recurrence .
To improve CAR T cell antigen recognition, new CAR T cell strategies have been developed to simultaneously target two or more different TAAs or to mix different CAR T cells targeting a single antigen. CAR T cells co-targeting CD19 and HER2 display greater antitumor activity in vivo than CAR T cells with a single target . IL13Rα2- and HER2-specific scFvs together form a bi-specific CAR (TanCAR) . TanCAR can recognize each antigen individually to trigger activation, while its functionality is synergistically enhanced upon encountering both antigens . Similarly, trivalent CAR T cells co-targeting HER2, IL13Rα2, and EphA2 effectively eliminate tumor cells . Numerous studies have demonstrated that bi-specific CAR T cells co-targeting CD19 and either CD20 , CD22 , or CD133  have the potential to reduce the risk of CD19-negative relapse.
Another multi-target strategy is to connect the scFvs of CD3 and the TAA using a flexible linker, to form bi-specific T cell engagers (BiTEs). BiTE-secreting CAR T cells can target multiple antigens, and also have the ability to activate and recruit bystander T cells . Anti-EGFR BiTEs enhance CAR T cell efficacy in vivo and eliminate glioblastoma . CAR T cells can kill tumor cells in a lower antigen density than BiTEs. And costimulatory molecules such as CD28 and 4-1BB can enhance the effect and killing function of BiTEs-activated T cells. Therefore, compared with BiTE or CAR T cells alone, BiTE-secreting CAR T cells display stronger antitumor ability through direct killing and induced bystander killing. Similarly, the construction of universal CAR T cells using adapters can target multiple TAAs without re-engineering T cells. Recently universal CAR structures, such as biotin-binding immune receptor, binding fluorescein isothiocyanate (anti-FITC CAR) and antibody Fc receptor (CD16 CAR), have been developed [29,30,31]. And a SUPRA (split, universal, and programmable) CAR system has been developed, which is composed of a leucine zipper CAR (zipCAR) and a scFv binding to the leucine zipper (zipFv). By adjusting zipFv, this approach makes CAR T cells to target multiple antigens, and reduces potential immunogenicity . Compared with traditional CAR T cells, these adapter systems (BiTEs and universal CARs) establish a bridge between CAR T cells and tumor cells, improving the safety and effectiveness of CAR T cells. In addition, the recognition ability of CAR T cells can also be improved by increasing antigen density. The exogenous addition of IL-22 increases the expression of MUC1. CAR-MUC1-IL22 T cells secreting IL-22 enhance recognition and cytotoxic ability against head and neck squamous cell carcinoma .
Targeting multiple antigens allows these CAR T cells to maintain their cytotoxicity, expand the range of recognized TAAs, and mitigate antigen escape. The modification of a multi-target CAR to recognize diverse tumor antigens results in more effective elimination of an established tumor than a unispecific CAR. Nevertheless, the combination of multiple targets increases the potential for off-target effects of CAR T cells. Multi-target CAR constructs greatly increase the genetic payload delivered to cells, which leads to reduced transduction efficiency . As transposon-based gene transfer systems for stable genetic modification, Sleeping Beauty and piggyBac transposon systems have attracted much attention. After electroporation, this non-viral approach confers superior CAR expression and is less toxic compared to conventional plasmids [34, 35]. Moreover, optimizing T cell culture conditions and CAR structure have shown to improve transfection efficiency . Therefore, multi-target CAR T cells require further study to improve their structural design and safety.
Enhancing CAR T cell proliferation and persistence
After homing to the tumor site, CAR T cells must undergo abundant expansion in order to eliminate the tumor in vivo. The major predictors of the clinical efficacy of CAR T cells are the proliferation and persistence of the T cells. Vast clinical trials of CAR T cell therapy have demonstrated poor persistence of T cells transfused in vivo, especially in solid tumors . Therefore, improving the expansion and persistence of CAR T cells is the focus of current research.
Costimulatory signaling domain optimization
Considerable efforts have been concentrated on the optimization of CAR constructs to enhance costimulatory signaling. The incorporation of one or more costimulatory signaling domains (CSSDs), such as CD28 , 4-1BB , OX40 , CD27 , or ICOS , can enhance the proliferation, persistence, and effector function of CAR T cells. The selection of costimulatory molecules also impacts the kinetics, tumoricidal profile, and safety of CAR T cells. Therefore, understanding the characteristics of known and emerging costimulatory signal domains is essential for improving the efficacy of CAR T cell therapy.
CD28 and 4-1BB are the most widely tested costimulatory domains in clinical trials . CD28-based CAR T cells are associated with more rapid T cell proliferation and tumor elimination, while CAR T cells expressing the 4-1BB domain possess noticeably slower kinetics, but greater persistence . Compared with CD28, ICOS costimulation induces a greater increase in PI3K activity  and drives CAR T cells to differentiate into Th17/Th1 cells . Analogous to 4-1BB-based CARs, CD27-based CARs lead to enhanced persistence compared with CD28-based CARs . The specific combination of costimulatory domains also has an impact on CAR T cell activity. PSMA-CAR T cells bearing both CD28 and 4-1BB display the strong PI3Kinase/Akt activation, relevant to reduced apoptosis and enhanced effector function of CD8+ T cells . Although a third generation CD28-OX40-CD3ζ CAR T cell increases the production of IL-2 and IL-10 , CAR T cells with a CD28-CD3ζ-OX40 construct show the opposite result . Analogously, ICOS-4-1BB-CD3ζ CAR (ICOSBBz) produces more IL-7 and IL-10, whereas the reverse CAR (BBICOSz) produces more IL-6 and IL-13, suggesting that the membrane-proximal domain is of great importance in determining cytokine secretion . In order to further explore the functional characteristics and clinical efficacy, various clinical trials on the second or third generation CARs above have been carried out, involving multiple antigen targets and tumor types  (Table 1).
In addition to known costimulatory molecules, other more novel costimulatory molecules are under active exploration. There is accumulating evidence demonstrating a critical role of herpesvirus entry mediator (HVEM, TNFRSF14) in the memory development of T cells . CAR T cells bearing an HVEM-derived CSSD display the greater effector function than those with CD28- or 4-1BB-derived CSSD, which may be due to the reduced T cell exhaustion, reprogrammed energy metabolism and balanced differentiation of memory T cell subsets . Toll-like receptor 2 (TLR2) is known to strengthen the effector function and proliferation of CD8+ T cells and reduce the activation threshold of costimulatory signaling [52, 53]. By adding TLR2 to the 3′ end of m28z CAR (m28zT2 CAR), the resulting CAR T cells exhibit enhanced cytotoxicity and expansion capacity and lower expression levels of exhaustion markers . However, various degrees of cytokine release syndrome (CRS) occurred in patients receiving 1928zT2 CAR T cells , suggesting that more clinical trials are required to monitor their side effects. Natural killer group 2 member D is a strong costimulatory receptor expressed on NK and CD8+ T cells . It can transmit an activating signal in T cells, via the adaptor protein, DNAX-activating protein 10 (DAP10), leading to memory formation and enhanced inflammatory cytokine production in CD8+ T cells [57, 58]. Thus, DAP10 incorporation into the 3′ end of CAR indeed improves the antitumor activity of CAR T cells against lung cancer, hepatocellular carcinoma, and gastric cancer in mouse models [59, 60]. Both TLR2 and DAP10 incorporation can elevate the expression of T-bet, a transcription factor mediating T cell differentiation, which provides a direction for exploring new costimulatory molecules. Collectively, these findings underscore the importance of optimizing costimulatory molecules in CAR T cells.
Thus, the CSSD is crucial for modulating CAR T cell activity. More significantly, elucidating the mechanistic and biological differences of costimulatory molecules and determining the optimal CSSD combination will be a top priority in future studies.
Optimal T cell activation, amplification, and persistence require not only antigen engagement (signal 1) and costimulatory signals (signal 2), but also cytokine support (signal 3). However, signal 3 is deficient in the TME, which hampers the full activation of T cells . Therefore, constructing CAR T cells that can provide signal 3 will help promote their activation and proliferation.
Transgenic cytokine expression
Initially, the exogenous administration of cytokines to cancer patients was put into clinical testing, but it was found to induce adverse events . To minimize systemic toxicity and induce the accumulation of high cytokine concentrations at the tumor site, T cells redirected for universal cytokine killing (TRUCKs) were developed. TRUCKs are engineered with a nuclear factor of activated T cells (NFAT)-responsive promoter that drives cytokine secretion, only when the CAR encounters a tumor antigen. The cytokines, IL-12, IL-18, IL-7, IL-15, and IL-21 have been extensively studied using this strategy.
IL-12 and IL-18 play a major role in augmenting the effector function of CAR T cells. IL-12 is known to activate NK cells and T lymphocytes, induce Th-1 type responses, and increase IFN-γ secretion [63, 64]. The inducible expression of IL-12 augments the antitumor capability of CAR T cells against lymphoma, hepatocellular carcinoma, ovarian tumors, and B16 melanoma in mouse models [65,66,67,68]. IL-18 has also been used to improve the therapeutic potential of CAR T cells. Initially identified as a potent inducer of IFN-γ, IL-18 contributes to T and NK cell activation and Th-1 cell polarization . Meso-targeted CAR T cells delivering IL-18 augment the secretion of IFN-γ and show enhanced proliferative ability to eradicate cancer cells . Furthermore, IL-18-releasing CAR T cells convert to T-bethighFoxO1low effectors, with superior activity against solid tumors . However, IL-18 may participate in promoting tumor angiogenesis, metastasis, and immune escape  and thus, there is a risk of tumor progression when using IL-18-expressing CAR T cells in clinical trials.
IL-7, IL-15, and IL-21 belong to the common γ chain cytokine family . They promote the generation of the stem cell-like memory T cell (Tscm) phenotype, which is associated with increased expansion and persistence [74,75,76,77,78]. Recently, 7 × 19 CAR T cells, which are engineered to co-express IL-7 and CCL19, prolong persistence compared with conventional CAR T cells, resulting in complete control of tumor progression . Similarly, GD2 CAR T cells expressing IL-15 retain a Tscm phenotype and have lower expression levels of exhaustion markers, like PD-1 and LAG3 . GPC3 CAR T cells co-expressing IL-15 and IL-21 exhibit the most superior proliferation and sustained persistence compared with either cytokine alone or controls .
It is worth emphasizing that in this strategy, the combined expression of cytokines may have the potential to maximize the function of CAR T cells, suggesting future directions for CAR T cell modification. In addition, other more promising cytokines, such as IL-27, IL-10, and IL-23, also warrant in-depth investigation. For instance, IL-27 induces a memory precursor cell phenotype in cytotoxic T lymphocytes, by stimulating high levels of IL-10 production . IL-10 promotes the generation of memory T cells and also markedly improves their cytotoxicity . Moreover, IL-23 promotes the proliferation of memory T cells . In a recent study reported by Ma and colleagues, CAR T cells engineered with the IL-23 p40 subunit showed increased granzyme B secretion and decreased PD-1 expression levels and superior antitumor ability . Therefore, further studies are required for a greater understanding of the effect of cytokines on T cells. This information will lay the groundwork for the next-generation CAR T cell modifications. At last, considering that high tumor burden is likely to over-activate TRUCKs, thereby releasing tremendous amounts of cytokines, which may enter circulation and produce toxicity. Therefore, more attention should be paid to monitor the risk of side effects. Meanwhile, larger-scope clinical trials are required to evaluate the safety and efficacy of TRUCKs.
Constitutive IL-7 cytokine receptor signaling
Because transgenic cytokine expression carries a latent risk of adverse events, Shum et al.  proposed a safer approach to deliver signal 3 to CAR T cells without the participation of exogenous cytokines. They constructed an IL-7 cytokine receptor (C7R) that activated STAT5, the downstream signaling molecule of IL-7, in an antigen-dependent manner. Therefore, C7R had a unique ability to provide signal 3 only to CAR T cells, without affecting bystander lymphocytes. In addition, C7R expression can significantly improve the activation, proliferation, and persistence of CAR T cells, to effectively eliminate triple-negative breast cancer cells .
CAR with JAK/STAT signaling
Both of the strategies described above highlight the significance of transmitting signal 3 to CAR T cells. The activation of JAK/STAT signaling is mediated by γc family cytokines, such as IL-7, IL-15, and IL-21, which exert a profound influence on the expansion, differentiation, development, and survival of lymphocytes . A novel CAR construct is developed to activate JAK/STAT signaling after antigen engagement. The new CAR, denoted 28-IL2RB-z(YXXQ), incorporates a truncated cytoplasmic domain of IL-2Rβ for STAT5 recruitment and a STAT3-binding YXXQ motif in the co-stimulation domain  (Fig. 2). 28-IL2RB-z(YXXQ) CAR T cells demonstrate superior proliferation and reduced terminal differentiation in vitro and in vivo. These findings reveal a pivotal role of the STAT3 pathway in promoting memory T cell differentiation and maintenance, in line with previous studies [89, 90]. Moreover, high STAT3 activity in T cells is correlated with favorable clinical outcomes , indicating that STAT3 activation may be an effective strategy to prolong CAR T cell persistence.
Increasing CAR T cell trafficking to the tumor site
The unremarkable efficacy of CAR T cells against solid tumors is associated with insufficient intratumoral T cell penetration and accumulation . Improving the homing of CAR T cells to the TME is a prerequisite for them to exert therapeutic activity. To successfully infiltrate and accumulate in tumor sites, CAR T cells undergo a series of processes, involving the adhesion of endothelial cells and interactions between chemokines and chemokine receptors  (Fig. 3). Although the local infusion of CAR T cells results in the significant regression of glioblastoma, this approach may not be effective for all tumor types, especially metastatic disease .
Chemokines and chemokine receptors play a pivotal role in mediating the directed migration of CAR T cells. Thus, equipping T cells with a chemokine receptor to better match and respond to tumor-derived chemokines may facilitate T cell migration ability. Integrin αvβ6-CAR T cells modified to express CXCR2 migrate more efficiently towards tumor-produced IL-8 . Similarly, CAR T cells overexpressing CXCR1 or CXCR2 can significantly reduce tumor burden, without obvious toxicity, in various solid tumor xenografts [96, 97]. Further, forced expression of CCR4 by CD30 CAR T cells in a Hodgkin lymphoma model, enhances their homing to Reed-Stemberg cells secreting CCL17 and CCL22, the ligand of CCR4 . Meso-targeted CAR T cells with CCR2b transduction result in increased migration and tumoricidal effect . Furthermore, CXCR3 has been shown to be essential for the intravascular adhesion and penetration of adoptively transferred CD8+ T cells . The expression of CXCL9, CXCL10, and CXCL11 (ligands of CXCR3), increased by chemotherapy drugs, enhances T cell trafficking to the TME , suggesting that CXCR3 is also a candidate for chemokine receptor modification of CAR T cells. Identifying an appropriate chemokine-chemokine receptor axis is of cardinal importance, but it requires numerous studies to confirm a specific chemokine with high expression levels in the targeted tumor and to overexpress the corresponding receptors on CAR T cells. The incorporation of a chemokine receptor does not affect the cytotoxicity of CAR T cells but exert superior antitumor activity. Of note, chemokines recruit not only effector T cells but also suppressor cells like regulatory T cells . Moreover, factors like tumor types, stroma, and ambient cytokines may affect the tumor’s chemokine signature. Therefore, these aspects need to be taken into account when choosing the suitable chemokine receptor for CAR T cell constructs.
Engineering CAR T cells to deliver chemokines locally is another feasible strategy to recruit more immune cells into the tumor lesion. For instance, forced expression of CCL19 substantially enhances the chemotactic capability of CD20 CAR T cells, by inducing T cell and DC cell migration . Co-expression of CCL5 and CXCL9 is key to CD8+ T cell recruitment, creating a loop to magnify lymphocyte engraftment . However, it should be noted that the production of endogenous chemokines in CAR T cells may block chemokine receptors on their surface, resulting in attenuated migratory ability.
Other obstacles, such as the tumor blood vessels and extracellular matrix (ECM), also hinder the infiltration of CAR T cells . Vascular endothelial growth factor receptor 2 (VEGFR2) plays a vital role in VEGF-mediated tumor angiogenesis and growth. CAR T cells targeting VEGFR2 display increased penetration and antitumor responses, by destroying tumor vascular endothelial cells . Enhancing the trafficking of CAR T cells can also be achieved by targeting fibroblast activation protein (FAP), which is a surface marker of cancer-associated stromal cells (CASCs) . FAP-CAR T cells can inhibit stromagenesis and angiogenesis by targeting FAP+ CASCs . However, FAP-CAR T cells cause serious cachexia and bone toxicities by affecting FAP+ bone marrow stromal cells . And the affinity and specificity of the FAP scFv deserve more attention to decrease the toxicity profile of this modification. Analogous to CASCs, heparan sulfate proteoglycan is an indispensable component of the ECM that can be degraded by heparanase. GD2 CAR T cells expressing heparanase enhance infiltration capacity and antitumor activity in a neuroblastoma xenograft model . It is worth noting that intravenous injection of ECM-degrading enzymes in patients leads to increased thromboembolic events, so precaution like the addition of low molecular weight heparin need to be adopted.
Overcoming CAR T cell dysfunction
There is increasing evidence that CAR T cells administered to patients gradually lose their effector function and fail to eliminate tumors, due to the TME and internal T cell factors [16, 110, 111]. T cell effector function is regulated by various factors, such as immune checkpoint molecules, transcription factors, metabolic molecules, and apoptotic genes . Therefore, regulating the factors that impact T cell function may enhance the efficacy of CAR T cells (Table 2).
Knocking out negative T cell regulators
Immune checkpoint molecules
Unlike hematological malignancies, a major problem with solid tumors is the presence of an immunosuppressive TME [10, 125]. In the TME, tumor cells activate immune checkpoint receptors (PD-1, CTLA-4, LAG3, TIGIT, VISTA) on T cells, through the expression of their ligands [3, 126] and deliver immunosuppressive signals, which drive T cells into a state of exhaustion, tolerance, or dysfunction [127, 128]. Therefore, blocking the co-suppression signal in CAR T cells may reverse the exhausted phenotype of CAR T cells and improve their antitumor function . Powerful techniques, such as CRISPR/Cas9, TALEN, and AAV-Cpf1 platforms, have recently emerged as efficient strategies to eradicate the immune checkpoint molecules, PD-1, CTLA-4, and LAG3 [113, 120, 121, 130].
Numerous studies have demonstrated that CRISPR/Cas9-mediated PD-1 disruption enhances the antitumor activity of CAR T cells in orthotopic mouse models of chronic myeloid leukemia, triple-negative breast cancer, hepatocellular carcinoma, and glioma [114,115,116,117]. The deletion of PD-1 improves cytokine production and the infiltration and persistence of CAR T cells. Moreover, PD-1-deficient CAR T cells enhance tumor clearance and relapse prevention. Dai et al.  and Gautron et al.  used AAV–Cpf1 and TALEN, respectively, to integrate CAR into TCRα constant chain (TRAC) and knock out PD-1. The simultaneous disruption of TRAC and PD-1 augments CAR T cell stability, to prevent adverse events, and enhances the efficacy of CAR T therapy. Similarly, the disruption of LAG3 or CTLA-4 can improve CAR T cell function [120, 121]. Using a one-shot CRISPR system simultaneously ablates four genes (HLA-I, TCR, PD1, and CTLA-4) to generate universal CAR T cells with both PD1 and CTLA-4 disruption . The simultaneous blockade of the PD-1 and CTLA-4 inhibitory pathways may enhance CAR T cell function. However, the efficiency of gene disruption and transfection in CAR T cells is low, because the gRNAs competed for Cas9 and the packaging size of the lentivirus is limited. And the deletion of PD-1 gene leads to accumulation of T cell exhaustion during chronic viral infection. Therefore, the complete deficiency of immune checkpoints in CAR T cells may drive the terminal differentiation of T cells.
Transcription factors play critical roles in the T cell-mediated immune response . The NR4A family of nuclear receptor transcription factors includes NR4A1, NR4A2, and NR4A3 . NR4A receptors are induced by NFAT, and are constitutively active receptors that do not depend on ligand engagement [132, 133]. It also has been shown that CD8+ T cells expressing PD-1 and TIM3 in the TME display chromatin accessibility and gene expression, which are correlated with the activation of NR4A receptors . Triple-NR4A-knockout CAR T cells decrease the expression levels of CCR7, PD-1, and TIM3, which induces tumor regression and prolonged the survival of tumor-bearing mice . The thymocyte selection-associated high-mobility group box (TOX) transcription factors are important in regulating the differentiation program of thymocytes . A series of studies have reported that TOX proteins are critical transcriptional regulators of T cell exhaustion [136,137,138]. TOX and TOX2 express at high levels in CAR T cells with an exhausted phenotype . Thus, CAR T cells with both TOX and TOX2 knocked out exhibite more effective antitumor responses than TOX-/- or TOX2-/- CAR T cells. A variety of transcription factors strictly regulate T cell dysfunction. Inhibiting the expression of exhaustion-related transcription factors in CAR T cells has the potential to prevent tumor-induced exhaustion, which provides large opportunities for tumor immunotherapy.
T cells are also regulated by metabolic molecules and apoptotic genes. Diacylglycerol kinases (DGKs) are a class of enzymes that catabolize diacylglycerols (DAGs) . DAG is an essential downstream molecule of the TCR, and it plays an important role in T cell signaling . There are three known DGK isoforms, DGKα, DGKδ, and DGKζ. T cells mainly express DGKα and DGKζ [124, 140]. Using CRISPR/Cas9 to knock out both DGKα and DGKζ increase TCR signaling in CAR T cells (DGK dKO CAR T) . DGK dKO CAR T cells significantly induce glioblastoma regression through enhanced effector function in a xenograft mouse model. Metabolism can affect T cell fate and function. Tumor cells compete with T cells for metabolic substances, which will greatly impact the antitumor ability of T cells. And improving CAR T cell function by controlling cell metabolism is an important modification strategy. The Fas receptor (APO-1/CD95) is a type I transmembrane glycoprotein belonging to the NGF/TNF family. It is widely distributed in various tissues and can induce apoptosis by binding to its ligand, FasL. Fas promotes the invasiveness and motility of multiple cancer cell types, and knockdown of Fas or FasL reduces tumor cell growth and induces cell death . Fas/FasL also induces T cell apoptosis, which affects the therapeutic outcome. Therefore, triple gene disruption in CAR T cells, knocking out TCR, HLA-I, and Fas have been performed . The universal CAR T cells with Fas ablation are resistant to apoptosis and enhance tumor control capability.
Dominant negative receptor
Forced expression of a dominant negative receptor (DNR) on the surface of CAR T cells is another feasible approach to overcome tumor-derived inhibition. To block immunosuppression mediated by the PD-1/PD-L1 axis, a PD-1 DNR is developed, merely composed of the extracellular PD-L1-binding domain, without the transmembrane and intracellular signaling domains. M28z CAR T cells engineered with the PD-1 DNR augment expansion, cytokine production, and cytotoxicity, and exhibit greater tumor control [142,143,144]. Transforming growth factor-β (TGF-β), a potent repressor of T lymphocyte function, is expressed abundantly in a variety of solid tumors, particularly prostate cancer. To shield CAR T cells from TGF-β-induced immune inhibition, a dominant negative TGF-β type II receptor (dnTGF-βRII) is generated. CAR T cells expressing dnTGF-βRII exhibit enhance antitumor efficacy in the treatment of prostate cancer [145, 146]. Moreover, CAR T cells engineered with a Fas DNR display superior antitumor activity against solid tumors, due to the disruption of apoptotic signaling by FasL in the TME . The inhibitory signaling pathways that restrict T cell function in the TME have not been fully elucidated so far. Further endeavor needs to be performed to illuminate the potential immunosuppressive mechanism. And blocking multiple inhibitory signaling pathways through DNR strategies may achieve greater clinical benefit.
Chimeric switch receptor
Chimeric switch receptors (CSRs) reverse the suppressive impact of inhibitory molecules on CAR T cells, by converting negative signals into positive signals. IL-4 is present at elevated levels in multiple solid tumors . It plays a crucial role in promoting tumor progression, by increasing the resistance of tumor cells to apoptosis and by downregulating Th1-polarized T cell responses . Thus, an IL-4 CSR has been constructed composed of the IL-4 receptor ectodomain linked to the IL-7 receptor endodomain (4/7 ICR) or the IL-21 receptor endodomain (4/21 ICR). CAR T cells with 4/7 ICR or 4/21 ICR augment cytolytic function and proliferative potential upon exposure to IL-4 and its cognate antigen [150,151,152,153]. CAR T cells expressing 4/7 ICR maintain their Th1 phenotype, whereas 4/21 ICR-CAR T cells display a Th17-polarized profile, with attenuated exhaustion . Downstream signaling triggered by IL-7 and IL-21 receptors may account for this difference. Immune checkpoint molecule CSRs have also been studied successively. These consist of the extracellular portion of inhibitory costimulatory molecules (PD-1, CTLA-4, etc.) and intracellular costimulation domains . CAR T cells with PD-1/CD28 increase resistance to inhibitory signals from PD-L1 and improve antitumor activity [155,156,157]. Moreover, CTLA-4/CD28 exerts an effect on T cells, similar to the effect of PD-1/CD28 [158, 159]. Because the types and concentrations of inhibitory molecules in the TME may vary in different solid tumors, the chosen CSR should specifically tailor to the characteristic of the TME. Additionally, CSR is primarily exerting enhancing effect through its intracellular domain, thus, other more promising endodomains need to be widely tested in the CSR design.
T cells engineered with CARs are ushering in a new era in cancer immunotherapy. Despite their spectacular success against hematological malignancies, CAR T cells are not effective for the treatment of solid tumors. CAR T cells play a role as combatants in the battlefront of tumor immunity, and their function directly determines therapeutic efficacy. In this review, we discussed external and internal factors that primarily impact CAR T cell function. Moreover, we summarized novel strategies developed to modify CAR T cells to improve their function. Targeting multiple TAAs improves the recognition ability of CAR T cells and reduces immune escape. CSSD optimization has been employed to strengthen costimulatory signaling (signal 2). Additional signal 3 can be provided by transgenic expression of cytokine, cytokine receptor or downstream factors for the optimal activation, proliferation, and persistence of CAR T cells. The overexpression of chemokine receptors on CAR T cells overcomes the obstacles of poor trafficking to tumor sites. Manipulating negative regulators in CAR T cells, such as the depletion of immune checkpoint molecules, helps to regain the effector response. Collectively, these approaches all contribute to exploiting the therapeutic potential of CAR T cells (Fig. 4).
However, adverse reactions, such as CRS and neurological toxicities, some of which can be fatal, have been reported in almost all clinical trials of CAR T cell therapy. The modification of CAR T cells can increase the effects of these adverse events. Therefore, the toxicity of CAR T cells must be taken into consideration. Furthermore, the implementation of additional clinical trials is greatly needed to determine whether the optimal CAR T cell modification can serve as a standard treatment option for patients with solid tumors. Thus, tremendous research efforts are required in the near future. Despite the current obstacles, optimized next-generation CAR T cells have the potential to eventually evolve into an efficient immunotherapy for solid tumors.
Availability of data and materials
Chimeric antigen receptor
T cell receptor
Human leukocyte antigen class-1
Single-chain variable fragment
Major histocompatibility complex
Food and Drug Administration
Bi-specific T cell engager
Costimulatory signaling domain
Herpesvirus entry mediator
Toll-like receptor 2
Cytokine release syndrome
DNAX-activating protein 10
T cell redirected for universal cytokine killing
Nuclear factor of activated T cells
Stem cell-like memory T cells
Constitutively signaling IL-7 cytokine receptor
Vascular endothelial growth factor receptor 2
Fibroblast activation protein
Cancer-associated stromal cells
sgRNA-guided clustered regularly interspaced short palindrome repeats-associated nuclease Cas9
Transcription activator-like effector nuclease
TCRα constant chain
Transforming growth factor-β
Dominant-negative TGF-β typeIIreceptor
Chimeric switch receptor
Human epidermal growth factor receptor-2
Prostate stem cell antigen
Mesenchymal to epithelial transition factor
Epidermal growth factor receptor variant III
Malignant pleural mesothelioma
Acute lymphoblastic leukemia
Chronic myeloid leukemia
Triple-negative breast cancer
Non-muscle invasive bladder cancer
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We would like to thank Editage (www.editage.cn) for English language editing.
This work was supported by grants from the National Key Research and Development Program (2018YFC1313400) and the National Natural Science Foundation of China (81771781, U1804281).
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Tian, Y., Li, Y., Shao, Y. et al. Gene modification strategies for next-generation CAR T cells against solid cancers. J Hematol Oncol 13, 54 (2020). https://doi.org/10.1186/s13045-020-00890-6
- CAR T cells
- Genetic engineering
- Solid tumor